Run Stan mixture cure model from Stan file

Does not use pre-compiled C code.

bmcm_stan_file(
  input_data,
  model = "exp",
  event_type = "PFS",
  tx_name = "IPILIMUMAB",
  iter = 3000,
  warmup = 1000,
  thin = 10,
  chains = 1,
  mean_cf = NA,
  var_cf = NA,
  centre_age = TRUE,
  ...
)

Arguments

input_data	Dataframe with all variables
model	Distribution name; exp, weibull, gompertz
event_type	Overall survival or progression-free survival; OS, PFS
tx_name	Treatment name; IPILIMUMAB, NIVOLUMAB, NIVOLUMAB+IPILIMUMAB
iter	int
warmup	Number of iterations burn-in; int
chains	Number of chains; int
mean_cf	Mean cure fraction; default to U0,1
var_cf	Variance of cure fraction
centre_age	Logical to centre regression covariate
...	Additional arguments