Package index

Model Fitting

Functions for compiling and fitting Bayesian mixture cure models.

bmcm_stan()

bmcm_stan

precompile_bmcm_model()

Precompile bmcm model

Visualization

Functions to create visual outputs of the fitted models.

plot_S_joint()

Plot survival curves for joint model and all treatments

cf_forest_plot()

Cure fraction forest plot using Stan output

cf_forest_cutpoint()

Cure fraction forest plot using cut-point Stan output

geom_kaplan_meier()

Geom for Kaplan-Meier ggplot

grid_arrange_shared_legend()

Use single legend for grid of plots

Data Preparation & Helpers

Internal and helper functions used to manipulate and prepare data.

prep_S_joint_data()

Prepare data for survival plot

prep_S_joint_data(<bmcm>)

Prepare data for survival plot

prep_S_joint_data(<default>)

already extracted matrix

prep_latent_data()

Prepare Stan data in latent model

prep_S_data()

Prepare posterior survival data for plotting

prep_bg_data()

Prepare background data

default_prior_latent()

Default prior latent variable

create_stancode()

Create Stan code from component parts