Run Stan mixture cure joint model from Stan file

Don't use pre-compiled C code.

bmcm_joint_stan_file(
  input_data,
  model_os = "exp",
  model_pfs = "exp",
  tx_name = "IPILIMUMAB",
  iter = 2000,
  warmup = 1000,
  thin = 10,
  chains = 1,
  params_os = NA,
  params_pfs = NA,
  params_cf = list(mean_beta_cf = NA, var_beta_cf = NA),
  centre_age = TRUE,
  ...
)

Arguments

input_data	Dataframe with all variables
model_os	Distribution name; exp, weibull, gompertz
model_pfs	Distribution name; exp, weibull, gompertz
tx_name	Treatment name; IPILIMUMAB, NIVOLUMAB, NIVOLUMAB+IPILIMUMAB
iter	integer
warmup	Number of iterations burn-in; integer
chains	Number of chains; integer
params_os	List
params_pfs	List
params_cf	List of possible parameters values; e.g. mean_beta_cf Mean cure fraction (default U0,1) var_beta_cf Variance of cure fraction
centre_age	Logical to centre regression covariate
...	Additional arguments